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Unexpected Rxns

@unexpectedrxns-blog / unexpectedrxns-blog.tumblr.com

As a chemist-in-training, I've found that, much like life, science is full of surprises. But the cool thing is, that's when you can learn the most. This blog is about my unexpected adventures in the world of science.
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txchnologist

New Microscope Offers Unprecedented View Of Life Inside A Cell

Anybody who was bitten by the biology bug in high school should find what these gifs show to be pretty amazing. These are a few of the stages that happen to our chromosomes during eukaryotic cellular division, a process vital to life when one parent cell splits to become two.

They were produced with a new microscopy technique developed in the Howard Hughes Medical Institute lab led by 2014 Nobel Prize in Chemistry winner Eric Betzig. The method, called lattice light sheet microscopy, lets scientists take high-speed, high-resolution images of objects smaller than cells. It does this without bombarding the cells with lethal doses of electromagnetic radiation, so researchers can watch cellular processes as they unfold in real time and in three dimensions.

Scientists have started using the new microscope to watch molecules move in multicellular organisms, to track developmental changes at the cellular level and to see viruses as they invade a cell. Read more about how the microscope works here. Learn what’s happening in each gif and see the video below.

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cenchempics

GREEN CLOUD

To create a classroom demonstration of diffusion, Andres Tretiakov, a high school lab technician at St. Paul’s School, in London, sprinkled 1 mg of a fluorescent dye, fluorescein, in a round-bottom flask filled with water. Students watched the flask until the solution was homogeneous, calculating the rate of diffusion. They repeated the experiment in hot- and cold-water baths to study the effect of temperature on diffusion.

Credit: Andres Tretiakov  (Enter our photo contest here)

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rudescience

Paramagnetism of Liquid Oxygen

In the triplet form, O2 molecules are paramagnetic. That is, they impart magnetic character to oxygen when it is in the presence of a magnetic field, because of the spin magnetic moments of the unpaired electrons in the molecule, and the negative exchange energy between neighboring O2molecules.

Liquid oxygen is attracted to a magnet to a sufficient extent that, in laboratory demonstrations, a bridge of liquid oxygen may be supported against its own weight between the poles of a powerful magnet.

Giffed by: rudescience  From: This video

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rudescience

Solidification of liquid Gallium 

Gallium is a chemical element with symbol Ga and atomic number 31. Gallium is a soft, silvery metal, and elemental gallium is a brittle solid at low temperatures, and melts at 29.76 °C (85.57 °F) (slightly above room temperature). Elemental gallium is not found in nature, but it is easily obtained by smelting.

Gallium metal expands by 3.1% when it solidifies, and therefore storage in either glass or metal containers are avoided, due to the possibility of container rupture with freezing. Gallium shares the higher-density liquid state with only a few materials, like water, silicon,germanium, bismuth, and plutonium.

Giffed by: rudescience  From: This video

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Here’s some stunning video of your immune cells doing their thing. 

Every so often, your body’s own cells become dangerous to you. When that happens, cytotoxic T cells (also known as T killer cells) are your immune system’s way of dealing with the threat. 

More often than not, they succeed in vanquishing cells that have become infected with viruses or mutated to the point of becoming cancerous before they can cause further trouble. 

To accomplish this, they’re armed with a battery of chemical weapons and enzymes that they can use to cause target cells to burst open in the event known as lysis. 

Examine the image captions for some more information on what you’re looking at in each one. 

I produced these gifs from some of the latest microscope footage to come out of the National Institutes of Health. Check out the source of this post for some more detailed information and video. It’s pretty amazing how small these things are; ten of them could fit end-to-end across the tip of a human hair. 

Source: youtube.com
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How some whales live more than 200 years

Bowhead whales (Balaena mysticetus), denizens of Arctic seas, are known to live more than 200 years, yet they show few signs of the age-related ailments that plague other animals, including humans. Even the bowhead’s closest cetacean relative, the much smaller minke whale, lives only 50 years. That suggests the larger whales (which have more than 1000 times as many cells as humans) have evolved some special natural mechanisms that protect them against cancer and aging. Now, in an effort to uncover the massive cetaceans’ longevity secrets, a team of scientists has mapped the bowhead’s genome. This is the first time that the genome of a large cetacean has been sequenced. The researchers compared the whale’s genome with that of nine mammals, including other cetaceans, cows, rats, and humans, they report online today in Cell Reports. Their comparative analysis uncovered mutations in two genes, one that is thought to confer resistance to cancer and is also linked to aging and DNA repair; the other is involved with DNA repair only. The scientists next intend to insert these genes into laboratory mice to see if they increase their longevity and resistance to disease.

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nubbsgalore

the waitomo limestone caves on new zealand’s northern island are home to an endemic species of bioluminescent fungus gnat (arachnocampa luminosa, or glow worm fly) who in their larval stage produce silk threads from which to hang and, using a blue light emitted from a modified excretory organ in their tails, lure in prey who then become ensnared in sticky droplets of mucus. 

Source: nubbsgalore
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A number of current medical treatments involve a process in which one type of human cell is converted to another, such as stem cells being converted to skin cells. During this process, there’s a stage called the stem cell stage, where the original cells are at risk of converting into multiple types of cells, rather than the single, desired type. But now a team of scientists from Washington University in the US has figured out how to avoid the stem cell stage altogether, and have successfully converted skin cells directly into functioning brain cells.
The team produced a specific type of brain cell called a medium spiny neuron. These nerve cells are important for controlling movement of the body and are the main cell type affected inHuntington’s disease.
The findings, which are published in the journal Neuron, report that the cells were implanted in the brains of mice, and survived for at least six months.
"Not only did these transplanted cells survive in the mouse brain, they showed functional properties similar to those of native cells," said developmental biologist and lead author of the study, Andrew S. Yoo, in a press release. ”These cells are known to extend projections into certain brain regions. And we found the human transplanted cells also connected to these distant targets in the mouse brain. That’s a landmark point about this paper.”
The team grew the human skin cells in an environment that resembled that of brain cells. Next they exposed the cultured cells to two microRNAs - small non-coding molecules - that unravelled the DNA needed for brain cells. The next hurdle was to reprogram the cells into specific medium spiny neurons, and this was done by exposing them to transcription factors - molecules that control the activity of a gene.
The team is now reprogramming cells taken from patients with Huntington’s disease into medium spiny neurons, using this method. 
This new approach presents the possibility of using a patient’s own cells in regenerative medicine, drastically reducing the risk of the cells being rejected by the immune system.
Source: EurekAlert
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Ebola may be the most feared disease right now, but for most of the 20th century, outbreaks of another disease left thousands of people paralyzed or confined to breathing machines: polio.
Poliomyelitis, which was also sometimes called infantile paralysis, primarily infected children. However, adults — including Franklin Delano Roosevelt, who later became president — also got the disease.
But thanks to the vaccines  developed by Jonas Salk and Albert Sabin, combined with one of the most successful vaccination campaigns in history, humanity turned the tide against this horrifying disease.
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Image

Fuming Nitric Acid Reacts with Nitrile Gloves

Fuming nitric acid is what you get when the concentration of nitric acid is greater than 70%. Red fuming nitric acid is an extremely strong oxidizer and reacts readily in contact with organic compounds like acetone. In addition, its vapor is corrosive and causes severe burns. As a main component in certain types of rocket fuel, it has a tendency of producing very exothermic reactions. When it comes in contact with nitrile gloves, for instance, it sets them on fire, as you can see in the GIF.
Image credit: Nile Red via Youtube

I’ve only ever worked with concentrated nitric acid or less and we were using nitrile gloves. Apparently the chemist in this video is wearing butyl rubber gloves.

Never settle for whatever is convenient. If you have doubts about your PPE consult a guide. Full glove guide including links to manufacturer charts relating to specific chemicals can be found here.

EDIT: Reblogging because I just discovered the GIF wasn’t working.

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Harvard Stem Cell Institute scientists at Massachusetts General Hospital have devised a new way to use stem cells in the fight against brain cancer. A team led by neuroscientist Khalid Shah, MS, PhD, who recently demonstrated the value of stem cells loaded with cancer-killing herpes viruses, now has a way to genetically engineer stem cells so that they can produce and secrete tumor-killing toxins.

In the AlphaMed Press journal STEM CELLS, Shah’s team shows how the toxin-secreting stem cells can be used to eradicate cancer cells remaining in mouse brains after their main tumor has been removed. The stem cells are placed at the site encapsulated in a biodegradable gel. This method solves the delivery issue that probably led to the failure of recent clinical trials aimed at delivering purified cancer-killing toxins into patients’ brains. Shah and his team are currently pursuing FDA approval to bring this and other stem cell approaches developed by them to clinical trials.

“Cancer-killing toxins have been used with great success in a variety of blood cancers, but they don’t work as well in solid tumors because the cancers aren’t as accessible and the toxins have a short half-life,” said Shah, who directs the Molecular Neurotherapy and Imaging Lab at Massachusetts General Hospital and Harvard Medical School.

“A few years ago we recognized that stem cells could be used to continuously deliver these therapeutic toxins to tumors in the brain, but first we needed to genetically engineer stem cells that could resist being killed themselves by the toxins,” he said. “Now, we have toxin-resistant stem cells that can make and release cancer-killing drugs.”

Cytotoxins are deadly to all cells, but since the late 1990s, researchers have been able to tag toxins in such a way that they only enter cancer cells with specific surface molecules; making it possible to get a toxin into a cancer cell without posing a risk to normal cells. Once inside of a cell, the toxin disrupts the cell’s ability to make proteins and, within days, the cell starts to die.

Shah’s stem cells escape this fate because they are made with a mutation that doesn’t allow the toxin to act inside the cell.  The toxin-resistant stem cells also have an extra bit of genetic code that allows them to make and secrete the toxins. Any cancer cells that these toxins encounter do not have this natural defense and therefore die. Shah and his team induced toxin resistance in human neural stem cells and subsequently engineered them to produce targeted toxins.

“We tested these stem cells in a clinically relevant mouse model of brain cancer, where you resect the tumors and then implant the stem cells encapsulated in a gel into the resection cavity,” Shah said. “After doing all of the molecular analysis and imaging to track the inhibition of protein synthesis within brain tumors, we do see the toxins kill the cancer cells and eventually prolonging the survival in animal models of resected brain tumors.”

Shah next plans to rationally combine the toxin-secreting stem cells with a number of different therapeutic stem cells developed by his team to further enhance their positive results in mouse models of glioblastoma, the most common brain tumor in human adults. Shah predicts that he will bring these therapies into clinical trials within the next five years.

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[…] science and everyday life cannot and should not be separated. Science, for me, gives a partial explanation for life. In so far as it goes, it is based on fact, experience and experiment. - Rosalind Franklin Science art - women in science series: Rosalind Franklin quote and DNA double helix vinyl wall decal by Cut’n’Paste

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What does it mean to simulate the human brain? Why is it important to do so? And is it even possible to simulate the brain separately from the body it exists in? These questions are discussed in a new paper published in the scientific journal Neuron today.

Simulating the brain means modeling it on a computer. But in real life, brains don’t exist in isolation. The brain is a complex and adaptive system that is seated within our bodies and entangled with all the other adaptive systems inside us that together make up a whole person. And the fact that the brain is a brain inside our bodies is something we can’t ignore when we attempt to simulate it realistically. Today, two Human Brain Project (HBP) researchers, Kathinka Evers, philosopher at the Centre for Research Ethics and Bioethics at Uppsala University and Yadin Dudal, neuroscientist at the Weizmann Institute of Science, publish a paper in Neuron that discusses the questions raised by brain simulations within and beyond the EU flagship project HBP.

For many scientists, understanding means being able to create a mental model that allows them to predict how a system would behave under different conditions. For the brain sciences, this type of understanding is currently only possible for a limited number of basic functions. In the article, Kathinka Evers and Yadin Dudal discuss the goal of simulation. In broad terms it has to do with understanding. But what does understanding mean in neuroscience?

As it dwells inside our bodies, the brain is always a result of what the individual has experienced up to that point. That is why, when we simulate the brain, we have to take this ‘experienced brain’ into account and try and reflect that.

According to Kathinka Evers, leader of the Ethics and Society part of the Human Brain Project, neglecting this experience would severely limit the outcome of any brain simulation. But if we are to include experience we have to simulate real-life situations.

“That is a daunting task: a large part of that experience is the brain’s interaction with the rest of the human body existing and interacting in a still larger social context”, says Kathinka Evers.

What outcome would be realistic to hope for in the Human Brain Project’s simulation? In neuroscience, computer simulations of specific systems are already in use. These simulations are a complement to other tools scientists use.

But there are some warnings to issue here. According to Kathinka Evers and Yadin Dudal, our knowledge to date is still very limited. There are many neuroscientists who think that it is too early for large scale brain simulations. Collecting the data we need for this is not an easy task. Another problem is whether we truly can understand what we are about to build. There are also technical limitations: there simply isn’t enough computing power available today.

But if we do manage to simulate the brain, would that mean we have created artificial consciousness? And can a computer be conscious at all? According to Kathinka Evers and Yadin Dudal, that depends on what consciousness is: If it is the result of certain types of organization or functions of biological matter, like the cells in the human body, then a computer can never gain consciousness. But if it is a matter of organization alone, without the need for biological matter, then the answer could be yes. But it is still a very hypothetical stance.

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labphoto

A highly fluorescent compound in the upper, etheral, organic layer. 

If often use this simple method to know that is there the desired compound in the layer what I will keep and use in the next step or not. The disadvantage of this method is, that things usually do not fluorescence under UV light, so I need at least a well substituted aromatic ring in my molecule to do this. 

If you want this picture as a high quality great looking print on your wall, now you can order it with a free worldwide shipping from Society6: http://society6.com/labphoto/a-highly-fluorescent-compound-in-the-upper-layer_print

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